SBS 2008 uses WSUS 3.0 as its backend for the Windows Small Business Server (Windows SBS) Update Services component. The Updates section on the SBS Console is a wrapper for the WSUS system and relies on a set configuration within WSUS and GPOs - if you make changes to WSUS outside of the SBS Console the SBS Update Services will deactivate ustil the configuration is returned to its former state and may lead to unexpected behaviour.
The required settings are detailed at http://blogs.technet.com/b/sbs/archive/2009/06/23/update-services-in-sbs-2008.aspx
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